Introduction to ascotraceR | Getting started | Wrangle weather data | Simulate Ascochyta blight spread | Tidy up or summarise the model output | Tidy up the model output | Summarise the model output | Plot using ggplot2
Package: ascotraceR 0.1.0
Paul Melloy
ascotraceR: Simulate the Spread of Ascochyta Blight in Chickpea
A spatiotemporal model that simulates the spread of Ascochyta blight in chickpea fields based on location-specific weather conditions. This model is adapted from a model developed by Diggle et al. (2002) <doi:10.1094/PHYTO.2002.92.10.1110> for simulating the spread of anthracnose in a lupin field.
Authors:
ascotraceR_0.1.0.tar.gz
ascotraceR_0.1.0.zip(r-4.7)ascotraceR_0.1.0.zip(r-4.6)ascotraceR_0.1.0.zip(r-4.5)
ascotraceR_0.1.0.tgz(r-4.6-any)ascotraceR_0.1.0.tgz(r-4.5-any)
ascotraceR_0.1.0.tar.gz(r-4.7-any)ascotraceR_0.1.0.tar.gz(r-4.6-any)
ascotraceR_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ascotraceR/json (API)
| # Install 'ascotraceR' in R: |
| install.packages('ascotraceR', repos = c('https://ihsankhaliq.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ihsankhaliq/ascotracer/issues
chickpeabotanical-epidemiologyplant-disease-modelagricultural-modellingagricultural-modelingcrop-protectionagricultural-researchmodelmodellingmodelingascochyta-rabieiascochyta-blightin-paddock-spreadmechanistic-modelsquantitative-epidemiologysimulation-modelsplash-dispersalspread-modelweather-driven-model
Last updated from:391bf4ffbe. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 150 | ||
| source / vignettes | OK | 177 | ||
| linux-release-x86_64 | OK | 154 | ||
| macos-release-arm64 | OK | 87 | ||
| macos-oldrel-arm64 | OK | 85 | ||
| windows-devel | OK | 99 | ||
| windows-release | OK | 111 | ||
| windows-oldrel | OK | 98 | ||
| wasm-release | OK | 170 |
Exports:format_weathersummarise_tracesummarize_tracetidy_tracetrace_asco
Dependencies:bootcircularclassclassIntcpp11data.tableDBIe1071genericsKernSmoothlubridatelutzMASSmvtnormproxyRcpps2sfterratimechangeunitswk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Format weather data into an an object suitable for use in ascotraceR spore dispersal models | format_weather |
| Summarise a trace_asco output nested list as a single data.frame object | summarise_trace summarize_trace |
| Tidy up a trace_asco output nested list | tidy_trace |
| Simulates the spread of Ascochyta blight in a chickpea field | trace_asco |
